STRINGSTRING
Noca_4084 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_4084" - Cyclase family protein in Nocardioides sp. JS614
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_4084Cyclase family protein (280 aa)    
Predicted Functional Partners:
Noca_4085
MmgE/PrpD family protein (476 aa)
 
          0.975
Noca_4086
Amidohydrolase (488 aa)
 
          0.934
Noca_4083
L-carnitine dehydratase/bile acid-inducible protein F (398 aa)
 
          0.752
Noca_0040
MmgE/PrpD family protein (453 aa)
 
          0.661
Noca_4067
MmgE/PrpD family protein (468 aa)
 
          0.623
Noca_0030
Major facilitator transporter (402 aa)
   
          0.562
Noca_2075
Cytochrome c biogenesis protein, transmembrane region (297 aa)
   
          0.520
Noca_4153
Hypothetical protein (863 aa)
   
          0.446
Noca_1843
MmgE/PrpD family protein (449 aa)
 
          0.442
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
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