Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Noca_4085PFAM: MmgE/PrpD family protein; KEGG: rxy:Rxyl_0368 MmgE/PrpD. (476 aa)    
Predicted Functional Partners:
Noca_4084
PFAM: cyclase family protein; KEGG: rxy:Rxyl_0367 putative cyclase.
 
     0.940
Noca_4086
PFAM: amidohydrolase; KEGG: ana:alr5010 D-hydantoinase.
 
    0.930
Noca_0204
2,3-dimethylmalate lyase; KEGG: bbr:BB0718 carboxyvinyl-carboxyphosphonate phosphorylmutase.
 
  
 0.757
Noca_4083
PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: sco:SCO2032 hypothetical protein; Belongs to the CoA-transferase III family.
 
    0.713
Noca_0888
KEGG: rxy:Rxyl_1676 citrate synthase I; TIGRFAM: citrate synthase I; PFAM: Citrate synthase; Belongs to the citrate synthase family.
  
  
 0.709
Noca_2035
KEGG: mbo:Mb2021c hypothetical protein.
 
  
 0.678
Noca_0733
PFAM: Citrate synthase; KEGG: sma:SAV3859 putative citrate synthase; Belongs to the citrate synthase family.
  
  
 0.666
Noca_1165
PFAM: cyclase family protein; KEGG: rxy:Rxyl_0352 putative cyclase.
 
     0.626
Noca_4079
PFAM: HpcH/HpaI aldolase; KEGG: rxy:Rxyl_0366 citryl-CoA lyase; Belongs to the HpcH/HpaI aldolase family.
 
  
 0.552
Noca_0591
PFAM: cyclase family protein; KEGG: pfl:PFL_4035 hypothetical polyketide cyclase.
 
     0.528
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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