STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_4089PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: sco:SCO2490 dehydrogenase (secreted protein). (234 aa)    
Predicted Functional Partners:
Noca_1177
PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: afu:AF1207 2-deoxy-D-gluconate 3-dehydrogenase (KduD).
 
  
 0.783
Noca_2136
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: pfl:PFL_3855 cis-1,2-dihydroxycyclohexa-3,5-diene-1-carboxylate dehydrogenase.
 
  
 0.782
Noca_0689
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: dar:Daro_3244 short-chain dehydrogenase/reductase SDR.
 
  
 0.781
Noca_1849
PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: bam:Bamb_4144 short-chain dehydrogenase/reductase SDR.
 
  
 0.781
Noca_4088
Hypothetical protein.
       0.773
Noca_2742
PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: rha:RHA1_ro04653 short chain dehydrogenase.
 
  
 0.772
Noca_3863
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KEGG: nfa:nfa34120 3-ketoacyl-(acyl-carrier-protein) reductase.
 
  
 0.768
Noca_3816
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: dar:Daro_1357 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
     0.749
Noca_2585
PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: sma:SAV6727 short chain dehydrogenase.
 
  
 0.712
Noca_3864
PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: sco:SCO1692 oxidoreductase.
 
     0.687
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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