STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_4095PFAM: regulatory proteins, IclR; KEGG: rxy:Rxyl_0364 transcriptional regulator, IclR family. (269 aa)    
Predicted Functional Partners:
Noca_3768
PFAM: regulatory proteins, IclR; KEGG: sco:SCO7618 transcriptional regulator.
  
     0.773
Noca_1008
PFAM: regulatory proteins, IclR; KEGG: mmc:Mmcs_1697 regulatory proteins, IclR.
  
     0.771
Noca_1292
SMART: regulatory proteins, IclR; KEGG: sma:SAV5141 differentiation regulon (IclR-family transcriptional regulator).
  
     0.753
Noca_2977
PFAM: Allophanate hydrolase subunit 1; KEGG: sma:SAV6938 inhibitor of KinA.
  
    0.542
Noca_0850
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: sco:SCO7702 GntR-family transcriptional regulator.
 
  
 0.511
Noca_0841
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: bha:BH3167 transcriptional regulator (GntR family).
 
  
 0.473
Noca_4094
Hypothetical protein.
       0.466
Noca_4063
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: mta:Moth_2304 GntR-like.
 
  
 0.464
Noca_4197
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: rha:RHA1_ro02909 transcriptional regulator, GntR family.
 
  
 0.462
Noca_4096
PFAM: AMP-dependent synthetase and ligase; KEGG: rxy:Rxyl_0353 AMP-dependent synthetase and ligase.
   
 
 0.452
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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