Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
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[Homology]
Score
Noca_4111Transcriptional regulator, TetR family; PFAM: regulatory protein, TetR; KEGG: rha:RHA1_ro02343 probable transcriptional regulator, TetR family. (211 aa)    
Predicted Functional Partners:
Noca_4109
PFAM: MaoC domain protein dehydratase; KEGG: tth:TTC0237 dehydrogenase.
 
   
 0.615
Noca_4110
PFAM: Enoyl-CoA hydratase/isomerase; KEGG: fal:FRAAL2628 putative enoyl-CoA hydratase/isomerase, involved in phenylacetic acid degradation; Belongs to the enoyl-CoA hydratase/isomerase family.
  
    0.541
Noca_4108
PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: pst:PSPTO_4243 UreA amidolyase-related protein.
       0.404
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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