STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_4119KEGG: ccr:CC2307 hypothetical protein. (133 aa)    
Predicted Functional Partners:
Noca_4118
PFAM: beta-ketoacyl synthase; KEGG: cya:CYA_2873 3-oxoacyl-[acyl-carrier-protein] synthase II; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
       0.773
Noca_4120
PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: rha:RHA1_ro04654 3-oxoacyl-[acyl-carrier-protein] reductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.644
Noca_4121
PFAM: AMP-dependent synthetase and ligase; KEGG: tfu:Tfu_1300 DitJ-like CoA ligase (AMP forming), possibly related to diterpenoid metabolism.
  
    0.527
Noca_4122
Amino acid/amide ABC transporter membrane protein 1, HAAT family; PFAM: inner-membrane translocator; KEGG: bbr:BB4292 branched-chain amino acid transport system permease; TC 3.A.1.4.-.
       0.523
Noca_4123
PFAM: inner-membrane translocator; KEGG: gsu:GSU1732 branched-chain amino acid ABC transporter, permease protein; TC 3.A.1.4.-; Belongs to the binding-protein-dependent transport system permease family.
       0.523
Noca_4124
Amino acid/amide ABC transporter ATP-binding protein 1, HAAT family; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpe:RPE_3782 ABC transporter related; TC 3.A.1.4.-.
       0.523
Noca_4125
Urea ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sco:SCO7182 putative branched amino acid transport system ATP-binding protein.
       0.523
Noca_4126
PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: rha:RHA1_ro08152 probable fatty acid-CoA racemase; Belongs to the CoA-transferase III family.
       0.523
Noca_4116
PFAM: AMP-dependent synthetase and ligase; KEGG: rxy:Rxyl_0353 AMP-dependent synthetase and ligase.
  
    0.463
Noca_4112
Amino acid/amide ABC transporter ATP-binding protein 2, HAAT family; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pol:Bpro_0356 ABC transporter related; TC 3.A.1.4.-.
       0.458
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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