STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_4133PFAM: short-chain dehydrogenase/reductase SDR; KEGG: nfa:nfa25020 putative short chain dehydrogenase. (270 aa)    
Predicted Functional Partners:
Noca_4135
PFAM: MaoC domain protein dehydratase; KEGG: sma:SAV6603 hypothetical protein.
  
 0.830
Noca_4134
PFAM: acyl-CoA dehydrogenase domain protein; KEGG: rha:RHA1_ro07066 probable acyl-CoA dehydrogenase.
  
  0.827
Noca_4136
Propionyl-CoA carboxylase; PFAM: carboxyl transferase; KEGG: ade:Adeh_0250 carboxyl transferase.
  
 
 0.800
Noca_4132
PFAM: protein of unknown function DUF35; KEGG: mpa:MAP0797 hypothetical protein.
 
     0.780
Noca_4131
KEGG: nfa:nfa22710 putative lipid-transfer protein.
 
 
 0.776
Noca_3816
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: dar:Daro_1357 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
 
 0.749
Noca_4130
PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: mpa:MAP3122 FadE1_2.
 
  0.726
Noca_4128
PFAM: acyl-CoA dehydrogenase domain protein; KEGG: fal:FRAAL3878 putative acyl-CoA dehydrogenase.
  
  0.655
Noca_4139
PFAM: Enoyl-CoA hydratase/isomerase; KEGG: mbo:Mb2855 enoyl-CoA hydratase.
  
 0.636
Noca_4129
PFAM: aminoglycoside phosphotransferase; KEGG: rxy:Rxyl_2337 aminoglycoside phosphotransferase.
  
 
 0.607
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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