STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_4149Transcriptional regulator, CdaR family; PFAM: purine catabolism PurC domain protein; KEGG: sco:SCO7033 regulatory protein. (509 aa)    
Predicted Functional Partners:
Noca_0087
Transcriptional regulator, CdaR family; KEGG: sma:SAV2725 transcriptional regulator.
 
     0.700
Noca_1111
KEGG: pae:PA1915 hypothetical protein.
  
     0.650
Noca_4276
Transcriptional regulator, CdaR family; KEGG: rha:RHA1_ro04370 hypothetical protein.
 
     0.645
Noca_0097
Regulator of polyketide synthase expression-like protein; KEGG: sco:SCO1052 regulatory protein.
  
     0.621
Noca_4144
PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: mca:MCA1307 cytosine deaminase.
 
     0.596
Noca_4150
KEGG: nfa:nfa27940 hypothetical protein.
       0.558
Noca_0608
Transcriptional regulator, CdaR family; KEGG: rha:RHA1_ro03774 hypothetical protein.
 
     0.538
Noca_4148
PFAM: basic membrane lipoprotein; KEGG: mlo:mll4178 hypothetical protein, contains weak similarity to membrane lipoprotein.
       0.537
Noca_4145
PFAM: inner-membrane translocator; KEGG: mlo:mll4174 sugar ABC transporter, permease protein, rbsC-2; Belongs to the binding-protein-dependent transport system permease family.
       0.527
Noca_4146
PFAM: inner-membrane translocator; KEGG: sme:SMa2367 putative ABC transporter, permease; Belongs to the binding-protein-dependent transport system permease family.
       0.527
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.