Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Noca_4152KEGG: mpa:MAP2481c hypothetical protein. (201 aa)    
Predicted Functional Partners:
Noca_4010
KEGG: mmc:Mmcs_1152 hypothetical protein.
  
     0.702
Noca_3635
KEGG: mbo:Mb3194 hypothetical protein.
  
     0.701
Noca_3720
KEGG: nfa:nfa29830 hypothetical protein.
  
     0.691
Noca_1983
PFAM: alpha/beta hydrolase fold; KEGG: rha:RHA1_ro05212 probable hydrolase.
 
  
 0.687
Noca_3357
PFAM: GCN5-related N-acetyltransferase; KEGG: mmc:Mmcs_0265 GCN5-related N-acetyltransferase.
  
     0.662
Noca_3636
PFAM: aminoglycoside phosphotransferase; KEGG: mmc:Mmcs_1560 aminoglycoside phosphotransferase.
 
     0.643
Noca_3208
KEGG: mmc:Mmcs_2752 hypothetical protein.
  
     0.617
Noca_4151
Hypothetical protein.
       0.605
Noca_1860
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: fal:FRAAL4180 hypothetical protein.
  
     0.600
Noca_0302
KEGG: nfa:nfa48960 hypothetical protein.
 
     0.542
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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