Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Noca_4155KEGG: tfu:Tfu_1315 hypothetical protein. (168 aa)    
Predicted Functional Partners:
Noca_4157
PFAM: glycosyl transferase, family 2; KEGG: tfu:Tfu_1732 hypothetical protein.
 
     0.852
Noca_4156
Dihydropteroate synthase; Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8- dihydropteroate (H2Pte), the immediate precursor of folate derivatives.
 
     0.843
Noca_4154
PFAM: bifunctional deaminase-reductase domain protein; KEGG: tfu:Tfu_1316 hypothetical protein.
 
     0.818
Noca_4153
KEGG: noc:Noca_0728 hypothetical protein.
       0.618
Noca_4158
Transcriptional regulator, TetR family; PFAM: regulatory protein, TetR; KEGG: fal:FRAAL2897 putative transcription regulator TetR/AcrR family.
       0.565
Noca_1413
KEGG: tfu:Tfu_2513 hypothetical protein.
  
     0.563
Noca_4290
PFAM: ATP-binding region, ATPase domain protein domain protein; KEGG: sco:SCO0542 hypothetical regulatory protein.
  
     0.523
Noca_1384
KEGG: fal:FRAAL5554 hypothetical protein.
  
     0.498
Noca_2053
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: nfa:nfa20320 hypothetical protein.
  
     0.462
Noca_0308
KEGG: fal:FRAAL2961 hypothetical protein.
  
     0.452
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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