STRINGSTRING
Noca_4160 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_4160" - Cell wall hydrolase/autolysin in Nocardioides sp. JS614
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_4160Cell wall hydrolase/autolysin (259 aa)    
Predicted Functional Partners:
Noca_4161
UDP-galactose 4-epimerase (334 aa)
              0.863
Noca_0754
Lytic transglycosylase catalytic subunit (291 aa)
       
  0.689
Noca_3384
Glycoside hydrolase family 3 protein (631 aa)
       
  0.669
Noca_4049
Hypothetical protein (199 aa)
   
          0.632
Noca_1787
Hypothetical protein (255 aa)
   
          0.610
Noca_1243
NLP/P60 protein (169 aa)
 
   
  0.595
Noca_4603
Hypothetical protein (95 aa)
   
          0.535
Noca_4159
Hypothetical protein (276 aa)
              0.531
Noca_3124
NLP/P60 protein (327 aa)
       
  0.526
Noca_4513
Glycoside hydrolase family 3 protein (388 aa)
       
  0.520
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
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