Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Noca_4170Transcriptional regulator, MarR family; PFAM: regulatory protein, MarR; regulatory protein, ArsR; KEGG: mmc:Mmcs_2643 transcriptional regulator, MarR family. (147 aa)    
Predicted Functional Partners:
Noca_4171
PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: sco:SCO7374 nitrate reductase NarB (fragment); Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
     
 0.557
Noca_4172
KEGG: mpa:MAP4100c hypothetical protein.
       0.546
Noca_4173
PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: rha:RHA1_ro08310 short chain dehydrogenase.
 
     0.459
Noca_4175
PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding; thiamine pyrophosphate enzyme, central region; thiamine pyrophosphate enzyme TPP binding domain protein; KEGG: mpa:MAP3255 pyruvate decarboxylase; Belongs to the TPP enzyme family.
 
    0.436
Noca_4176
PFAM: Mandelate racemase/muconate lactonizing enzyme, N-terminal domain protein; Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein; KEGG: rha:RHA1_ro08313 probable mandalate racemase.
 
     0.425
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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