STRINGSTRING
Noca_4178 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_4178" - Glycoside hydrolase 15-like protein in Nocardioides sp. JS614
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_4178Glycoside hydrolase 15-like protein (602 aa)    
Predicted Functional Partners:
Noca_3994
Alpha,alpha-trehalose-phosphate synthase (482 aa)
 
 
  0.880
Noca_4173
Short chain dehydrogenase (335 aa)
              0.878
Noca_4177
Alcohol dehydrogenase (358 aa)
   
        0.874
Noca_4179
Hypothetical protein (67 aa)
              0.859
Noca_4176
Mandelate racemase/muconate lactonizing protein (376 aa)
              0.816
Noca_4174
FAD linked oxidase domain-containing protein (1000 aa)
   
        0.814
Noca_4175
Thiamine pyrophosphate protein (593 aa)
              0.811
Noca_3989
HAD family hydrolase; Removes the phosphate from trehalose 6-phosphate to produce free trehalose (281 aa)
 
   
  0.637
glgE
Alpha amylase; Maltosyltransferase that uses maltose 1-phosphate (M1P) as the sugar donor to elongate linear or branched alpha-(1->4)- glucans. Is involved in a branched alpha-glucan biosynthetic pathway from trehalose, together with TreS, Mak and GlgB (670 aa)
 
   
  0.601
Noca_4180
Hypothetical protein (417 aa)
              0.568
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
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