Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Noca_4189KEGG: rha:RHA1_ro02904 possible fumarylacetoacetate hydrolase. (400 aa)    
Predicted Functional Partners:
Noca_4199
PFAM: aldehyde dehydrogenase; KEGG: rha:RHA1_ro03790 aldehyde dehydrogenase (NAD+).
 
   
 0.845
Noca_4190
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mlo:mll8574 hypothetical protein.
 
     0.834
Noca_4191
PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: gbe:GbCGDNIH1_1383 blasticidin-S deaminase.
       0.779
Noca_4192
Nucleoside ABC transporter membrane protein; PFAM: inner-membrane translocator; KEGG: rxy:Rxyl_0158 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
       0.773
Noca_4193
PFAM: inner-membrane translocator; KEGG: cya:CYA_1582 carbohydrate ABC transporter-2 (CUT2) family, permease protein; Belongs to the binding-protein-dependent transport system permease family.
       0.773
Noca_4194
Nucleoside ABC transporter ATP-binding protein; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rxy:Rxyl_0156 ABC transporter related.
       0.773
Noca_4195
PFAM: basic membrane lipoprotein; KEGG: rxy:Rxyl_0155 basic membrane lipoprotein.
       0.773
Noca_4188
PFAM: aldehyde dehydrogenase; KEGG: rha:RHA1_ro01994 probable succinate-semialdehyde dehydrogenase (NAD(P)+).
     
 0.755
Noca_0037
PFAM: aldehyde dehydrogenase; KEGG: nfa:nfa35030 putative aldehyde dehydrogenase.
 
   
 0.724
Noca_0086
PFAM: aldehyde dehydrogenase; KEGG: rha:RHA1_ro02898 aldehyde dehydrogenase (NADP+).
 
   
 0.708
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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