STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_4197Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: rha:RHA1_ro02909 transcriptional regulator, GntR family. (255 aa)    
Predicted Functional Partners:
Noca_1174
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: sma:SAV6021 GntR-family transcriptional regulator.
 
  
 0.791
Noca_1173
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH; GntR domain protein; KEGG: mta:Moth_0073 transcriptional regulator, GntR family.
 
  
 0.789
Noca_4198
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; KEGG: fal:FRAAL3120 2-deoxy-D-gluconate 3-dehydrogenase (2-keto-3-deoxygluconate oxidoreductase).
  
  
 0.780
Noca_4199
PFAM: aldehyde dehydrogenase; KEGG: rha:RHA1_ro03790 aldehyde dehydrogenase (NAD+).
       0.743
Noca_0402
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH; UbiC transcription regulator-associated domain protein; KEGG: tte:TTE0461 Transcriptional regulator.
  
  
 0.723
Noca_4196
PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; KEGG: rha:RHA1_ro02903 phosphoglycerate dehydrogenase.
 
     0.666
Noca_4190
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: mlo:mll8574 hypothetical protein.
 
     0.546
Noca_4189
KEGG: rha:RHA1_ro02904 possible fumarylacetoacetate hydrolase.
 
     0.541
Noca_0543
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH; UbiC transcription regulator-associated domain protein; KEGG: rxy:Rxyl_1898 transcriptional regulator, GntR family.
  
  
 0.528
Noca_4502
PFAM: carboxyl transferase; Enoyl-CoA hydratase/isomerase; KEGG: rha:RHA1_ro02935 acetyl-CoA carboxylase carboxyl transferase subunit.
  
  
 0.520
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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