STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_4200KEGG: rha:RHA1_ro02104 hypothetical protein. (231 aa)    
Predicted Functional Partners:
Noca_4201
PFAM: helix-turn-helix domain protein; KEGG: fal:FRAAL0956 putative DNA-binding protein (partial match).
       0.785
Noca_1817
KEGG: sma:SAV4459 hypothetical protein.
  
     0.697
Noca_3002
PFAM: polysaccharide biosynthesis protein; KEGG: rha:RHA1_ro05189 possible xylose transporter.
  
     0.683
Noca_3123
KEGG: sma:SAV6064 hypothetical protein.
  
     0.578
Noca_3186
Hypothetical protein; KEGG: mbo:Mb2137 probable integral membrane protein.
  
     0.575
Noca_1441
KEGG: fal:FRAAL1307 hypothetical protein.
  
     0.568
Noca_1408
KEGG: fal:FRAAL1258 hypothetical protein; putative signal peptide.
  
     0.567
Noca_2858
KEGG: sco:SCO2134 hypothetical protein.
  
     0.552
Noca_2991
KEGG: rha:RHA1_ro05190 hypothetical protein.
  
     0.543
Noca_3586
Hypothetical protein; KEGG: sma:SAV3318 putative RNA polymerase ECF-subfamily sigma factor.
  
     0.534
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.