Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Noca_4244PFAM: regulatory protein, TetR; KEGG: fra:Francci3_1551 transcriptional regulator, TetR family. (212 aa)    
Predicted Functional Partners:
Noca_4242
PFAM: MMPL domain protein; KEGG: fal:FRAAL1424 putative integral membrane export protein.
  
    0.516
Noca_4241
Hypothetical protein.
       0.508
Noca_4243
KEGG: sma:SAV1712 hypothetical protein.
       0.508
Noca_0809
PFAM: regulatory protein, TetR; KEGG: mlo:mll7734 transcriptional regulator.
  
     0.447
Noca_4300
PFAM: regulatory protein, TetR; KEGG: rha:RHA1_ro02626 transcriptional regulator.
  
     0.406
Noca_1827
PFAM: regulatory protein, TetR; KEGG: nfa:nfa34140 putative transcriptional regulator.
  
     0.404
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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