STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_4252Conserved hypothetical protein; May play a role in the intracellular transport of hydrophobic ligands. (164 aa)    
Predicted Functional Partners:
Noca_4250
PFAM: glycine cleavage T protein (aminomethyl transferase); KEGG: sma:SAV4028 hypothetical protein; Belongs to the GcvT family.
 
    0.815
rsmA
Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
  
  
 0.766
Noca_4251
Nickel uptake regulator, Fur family; PFAM: ferric-uptake regulator; Penicillinase repressor; KEGG: sma:SAV4029 iron uptake regulatory protein; Belongs to the Fur family.
       0.733
Noca_4253
KEGG: fra:Francci3_0454 conserved hypothetical protein.
       0.633
Noca_4254
KEGG: tcr:503617.20 kinetoplast DNA-associated protein Pfam: DUF1682 HC2 TolA PROSITE: ALA_RICH GLU_RICH.
       0.468
Noca_4007
Hypothetical protein; KEGG: bta:540183 similar to tyrosylprotein sulfotransferase 2 Pfam: DUF470 Sulfotransfer_1.
  
     0.456
mshD
GCN5-related N-acetyltransferase; Catalyzes the transfer of acetyl from acetyl-CoA to desacetylmycothiol (Cys-GlcN-Ins) to form mycothiol.
 
     0.454
Noca_2476
TIGRFAM: DNA-3-methyladenine glycosylase; PFAM: methylpurine-DNA glycosylase (MPG); KEGG: sma:SAV6486 putative 3-methyladenine DNA glycosylase; Belongs to the DNA glycosylase MPG family.
 
     0.404
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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