Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Noca_4253KEGG: fra:Francci3_0454 conserved hypothetical protein. (118 aa)    
Predicted Functional Partners:
Noca_3143
PFAM: SirA family protein; KEGG: sma:SAV6046 aminotransferase; Belongs to the sulfur carrier protein TusA family.
 
   
 0.657
Noca_4254
KEGG: tcr:503617.20 kinetoplast DNA-associated protein Pfam: DUF1682 HC2 TolA PROSITE: ALA_RICH GLU_RICH.
       0.632
Noca_4252
Conserved hypothetical protein; May play a role in the intracellular transport of hydrophobic ligands.
       0.612
Noca_4250
PFAM: glycine cleavage T protein (aminomethyl transferase); KEGG: sma:SAV4028 hypothetical protein; Belongs to the GcvT family.
 
     0.578
Noca_4251
Nickel uptake regulator, Fur family; PFAM: ferric-uptake regulator; Penicillinase repressor; KEGG: sma:SAV4029 iron uptake regulatory protein; Belongs to the Fur family.
       0.522
Noca_3029
KEGG: rha:RHA1_ro04356 hypothetical protein.
  
     0.451
Noca_4677
PFAM: transcriptional regulator PadR family protein; KEGG: sma:SAV4295 transcriptional regulator PadR-like family.
  
     0.415
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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