STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_4269PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: sco:SCO4505 cold shock protein. (67 aa)    
Predicted Functional Partners:
tuf
Translation elongation factor 1A (EF-1A/EF-Tu); This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
   
  
 0.710
rpsL
SSU ribosomal protein S12P; With S4 and S5 plays an important role in translational accuracy.
   
 
 0.678
rpmJ
PFAM: ribosomal protein L36; KEGG: sma:SAV4950 putative ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family.
  
 
 0.637
rplO
LSU ribosomal protein L15P; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.
   
   0.637
rpmE
LSU ribosomal protein L31P; Binds the 23S rRNA.
  
 
 0.623
rplA
LSU ribosomal protein L1P; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release.
  
   0.611
rpsB
PFAM: ribosomal protein S2; KEGG: sco:SCO5624 30S ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.
  
 
 0.592
Noca_2989
SSU ribosomal protein S1P; PFAM: RNA binding S1 domain protein; KEGG: tfu:Tfu_1191 RNA binding S1.
  
  
 0.583
rpsO
SSU ribosomal protein S15P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.
  
 
 0.580
Noca_4040
PFAM: transcription factor CarD; KEGG: pac:PPA0357 putative transcriptional regulator.
  
  
 0.565
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.