Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Noca_4271Xanthine dehydrogenase, molybdenum binding subunit apoprotein; PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; KEGG: ctc:CTC02477 putative carbon-monoxide dehydrogenase, large subunit. (827 aa)    
Predicted Functional Partners:
Noca_4272
Purine hydroxylase delta subunit apoprotein; PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: chy:CHY_0691 2Fe-2S iron-sulfur cluster binding domain.
 
 0.997
Noca_3970
PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: rha:RHA1_ro04977 carbon monoxide dehydrogenase small subunit (ferredoxin).
 
 0.989
Noca_0606
PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: gka:GKP18 carbon monoxide dehydrogenase small chain.
 
 0.987
Noca_0229
Carbon monoxide dehydrogenase, small subunit; PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: rxy:Rxyl_0111 (2Fe-2S)-binding protein.
 
 0.986
Noca_0223
PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: rha:RHA1_ro05231 possible carbon monoxide dehydrogenase.
 
 0.984
Noca_1168
PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: chy:CHY_0691 2Fe-2S iron-sulfur cluster binding domain.
 
 0.984
Noca_0595
PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: rxy:Rxyl_1873 (2Fe-2S)-binding protein.
 
 0.976
Noca_1490
PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: rha:RHA1_ro03490 probable carbon monoxide dehydrogenase small subunit (ferredoxin).
 
 0.976
Noca_4273
PFAM: molybdopterin dehydrogenase, FAD-binding; KEGG: sme:SMb20130 putative dehydrogenase protein.
 
 
 0.969
Noca_4457
PFAM: ferredoxin; [2Fe-2S]-binding domain protein; KEGG: mag:amb1303 aerobic-type carbon monoxide dehydrogenase small subunit CoxS/CutS homolog.
 
 0.937
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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