STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_4274KEGG: rha:RHA1_ro04368 hypothetical protein. (570 aa)    
Predicted Functional Partners:
Noca_4284
KEGG: rha:RHA1_ro04372 possible coenzyme PQQ synthesis protein.
 
     0.778
Noca_4277
PFAM: protein of unknown function DUF336; KEGG: rha:RHA1_ro04371 possible GlcG protein.
 
     0.609
Noca_4276
Transcriptional regulator, CdaR family; KEGG: rha:RHA1_ro04370 hypothetical protein.
  
     0.529
Noca_4068
PFAM: Endoribonuclease L-PSP; KEGG: bbr:BB1154 hypothetical protein.
 
     0.476
Noca_4275
PFAM: major facilitator superfamily MFS_1; KEGG: rha:RHA1_ro04369 multidrug transport protein, MFS superfamily.
       0.474
Noca_4076
Hypothetical protein; KEGG: ade:Adeh_0244 LigA.
  
     0.456
Noca_4285
PFAM: protein of unknown function DUF1275; KEGG: bli:BL00156 conserved membrane protein YoaK.
 
     0.414
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.