STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_4276Transcriptional regulator, CdaR family; KEGG: rha:RHA1_ro04370 hypothetical protein. (552 aa)    
Predicted Functional Partners:
Noca_4277
PFAM: protein of unknown function DUF336; KEGG: rha:RHA1_ro04371 possible GlcG protein.
 
     0.747
Noca_0637
PFAM: purine catabolism PurC domain protein; KEGG: mmc:Mmcs_3284 purine catabolism PurC-like protein.
 
     0.725
Noca_4149
Transcriptional regulator, CdaR family; PFAM: purine catabolism PurC domain protein; KEGG: sco:SCO7033 regulatory protein.
 
     0.645
Noca_4284
KEGG: rha:RHA1_ro04372 possible coenzyme PQQ synthesis protein.
 
     0.641
Noca_3378
Transcriptional regulator, CdaR family; PFAM: purine catabolism PurC domain protein; KEGG: mmc:Mmcs_5287 transcriptional regulator, CdaR.
 
     0.578
Noca_4274
KEGG: rha:RHA1_ro04368 hypothetical protein.
  
     0.529
Noca_4625
Transcriptional regulator, CdaR family; PFAM: purine catabolism PurC domain protein; KEGG: rha:RHA1_ro04467 possible transcriptional regulator.
 
     0.433
Noca_1487
KEGG: rha:RHA1_ro05298 hypothetical protein.
 
     0.419
Noca_4069
KEGG: mpa:MAP1460 hypothetical protein.
  
     0.408
Noca_1100
PFAM: phage integrase family protein; KEGG: mmc:Mmcs_4828 phage integrase; Belongs to the 'phage' integrase family.
  
    0.405
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.