STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_4277PFAM: protein of unknown function DUF336; KEGG: rha:RHA1_ro04371 possible GlcG protein. (150 aa)    
Predicted Functional Partners:
Noca_4284
KEGG: rha:RHA1_ro04372 possible coenzyme PQQ synthesis protein.
 
    0.826
Noca_4276
Transcriptional regulator, CdaR family; KEGG: rha:RHA1_ro04370 hypothetical protein.
 
     0.747
Noca_1770
TIGRFAM: ATP--cobalamin adenosyltransferase; PFAM: cobalamin adenosyltransferase; KEGG: sco:SCO5381 hypothetical protein; Belongs to the Cob(I)alamin adenosyltransferase family.
     0.679
Noca_4274
KEGG: rha:RHA1_ro04368 hypothetical protein.
 
     0.609
Noca_4030
PFAM: microcompartments protein; KEGG: dsy:DSY4991 hypothetical protein.
 
  
 0.450
Noca_4036
PFAM: Ethanolamine utilization protein EutN/carboxysome structural protein Ccml; KEGG: rba:RB2581 probable ethanolamine utilization protein EutN.
 
   
 0.417
Noca_4068
PFAM: Endoribonuclease L-PSP; KEGG: bbr:BB1154 hypothetical protein.
 
     0.415
Noca_0683
Rieske (2Fe-2S) domain protein; PFAM: ring hydroxylating dioxygenase, alpha subunit; Rieske [2Fe-2S] domain protein; KEGG: mmc:Mmcs_5458 ring hydroxylating dioxygenase, alpha subunit.
  
     0.400
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.