STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
Noca_4283Assimilatory nitrite reductase (NAD(P)H) small subunit; PFAM: Rieske [2Fe-2S] domain protein; KEGG: rha:RHA1_ro04373 probable dioxygenase ferredoxin component. (108 aa)    
Predicted Functional Partners:
Noca_4280
PFAM: Rieske [2Fe-2S] domain protein; KEGG: rha:RHA1_ro04376 probable aromatic ring dioxygenase.
 
     0.908
Noca_4282
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rha:RHA1_ro04374 reductase.
 
 
 0.904
Noca_4281
PFAM: aldehyde dehydrogenase; KEGG: rha:RHA1_ro04375 aldehyde dehydrogenase (NAD+); Belongs to the aldehyde dehydrogenase family.
  
  
 0.778
Noca_2600
TIGRFAM: uroporphyrin-III C-methyltransferase; siroheme synthase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: sma:SAV6796 uroporphyrin-III C-methyltransferase / precorrin-2 oxidase / ferrochelatase.
  
  
 0.706
Noca_0351
Assimilatory nitrate reductase (NADH) beta subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: mmc:Mmcs_3231 nitrite reductase (NAD(P)H) large subunit, NirB.
 
 
 0.705
Noca_2552
PFAM: Rieske [2Fe-2S] domain protein; KEGG: sco:SCO1923 putative dioxygenase ferredoxin subunit.
  
     0.693
Noca_0496
uroporphyrinogen-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Uroporphyrinogen III synthase HEM4; KEGG: sco:SCO3317 putative uroporphyrin-III C-methyltransferase/uroporphyrinogen-III synthase.
  
  
 0.644
Noca_0352
TIGRFAM: nitrite reductase [NAD(P)H], large subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: fal:FRAAL1355 nitrite reductase, large subunit, nucleotide-binding.
 
 
 0.635
Noca_4279
Gamma-glutamyltransferase 2, Threonine peptidase, MEROPS family T03; PFAM: gamma-glutamyltranspeptidase; KEGG: rha:RHA1_ro04377 probable gamma-glutamyltransferase.
     
 0.626
Noca_0832
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: rfr:Rfer_0300 FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
 
 
 0.610
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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