STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_4287PFAM: GCN5-related N-acetyltransferase; KEGG: cef:CE0548 hypothetical protein. (205 aa)    
Predicted Functional Partners:
Noca_1718
PFAM: protein of unknown function DUF214; KEGG: tte:TTE2713 ABC-type transport systems, involved in lipoprotein release, permease components.
  
     0.581
Noca_4288
PFAM: thioesterase superfamily protein; KEGG: mmc:Mmcs_2763 thioesterase superfamily.
       0.563
Noca_2177
PFAM: GCN5-related N-acetyltransferase; KEGG: sma:SAV703 acetyltransferase.
 
     0.439
Noca_4637
PFAM: GCN5-related N-acetyltransferase; KEGG: fal:FRAAL3248 putative acetyltransferase.
 
     0.407
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.