Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Noca_4300PFAM: regulatory protein, TetR; KEGG: rha:RHA1_ro02626 transcriptional regulator. (225 aa)    
Predicted Functional Partners:
Noca_0809
PFAM: regulatory protein, TetR; KEGG: mlo:mll7734 transcriptional regulator.
  
     0.572
menB-2
1,4-Dihydroxy-2-naphthoate synthase; Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4-dihydroxy-2- naphthoyl-CoA (DHNA-CoA); Belongs to the enoyl-CoA hydratase/isomerase family. MenB subfamily.
       0.526
Noca_4294
PFAM: 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: cef:CE0323 putative 3-hydroxybutyryl-CoA dehydrogenase.
 
  
 0.494
Noca_4298
PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: eba:ebA1959 cyclohexanecarboxyl-CoA dehydrogenase.
       0.489
Noca_4297
PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: cef:CE2778 putative 2-hydroxycyclohexanecarboxyl-CoA dehyrogenase.
 
     0.457
Noca_0817
PFAM: regulatory protein, TetR; KEGG: nfa:nfa34140 putative transcriptional regulator.
  
     0.434
Noca_4245
PFAM: regulatory protein, TetR; KEGG: cvi:CV1837 probable transcriptional regulator, TetR family.
  
     0.427
Noca_1827
PFAM: regulatory protein, TetR; KEGG: nfa:nfa34140 putative transcriptional regulator.
  
     0.424
Noca_3862
PFAM: regulatory protein, TetR; KEGG: nfa:nfa34140 putative transcriptional regulator.
  
     0.410
Noca_4244
PFAM: regulatory protein, TetR; KEGG: fra:Francci3_1551 transcriptional regulator, TetR family.
  
     0.406
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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