Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Noca_4302PFAM: Hemerythrin HHE cation binding domain protein; KEGG: sso:SSO1764 hypothetical protein. (168 aa)    
Predicted Functional Partners:
Noca_4303
4Fe-4S ferredoxin, iron-sulfur binding domain protein; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.
       0.757
Noca_4305
KEGG: rha:RHA1_ro08261 possible transcriptional regulator, MarR family.
 
     0.684
Noca_3979
PFAM: C4-dicarboxylate transporter/malic acid transport protein; KEGG: rfr:Rfer_4140 C4-dicarboxylate transporter/malic acid transport protein.
  
     0.572
Noca_4301
Hypothetical protein.
       0.545
Noca_4304
KEGG: bba:Bd1520 hypothetical protein.
       0.537
Noca_2106
Transcriptional regulator, ArsR family; PFAM: regulatory protein, ArsR; KEGG: rha:RHA1_ro08261 possible transcriptional regulator, MarR family.
  
     0.473
Noca_0316
PFAM: oxidoreductase, molybdopterin binding; KEGG: mpa:MAP2359c hypothetical protein.
  
     0.454
Noca_3980
PFAM: Hemerythrin HHE cation binding domain protein; KEGG: pac:PPA0240 hypothetical protein.
  
     0.410
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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