Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Noca_4320KEGG: tfu:Tfu_2746 hypothetical protein. (119 aa)    
Predicted Functional Partners:
Noca_4321
PFAM: regulatory protein, ArsR; KEGG: sma:SAV5143 ArsR-family transcriptional regulator.
 
     0.805
Noca_0500
PFAM: Phosphoglycerate mutase; KEGG: sma:SAV4796 phosphoglycerate mutase.
 
     0.734
Noca_3153
KEGG: sco:SCO2169 integral membrane protein.
  
     0.733
Noca_2911
KEGG: sma:SAV2403 hypothetical protein.
  
     0.711
rbpA-2
Conserved hypothetical protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters.
  
     0.695
Noca_3056
KEGG: sma:SAV6128 hypothetical protein.
  
     0.683
Noca_2710
SMART: regulatory protein, MerR; KEGG: pac:PPA1087 predicted transcriptional regulator.
 
    0.678
xseB
Exodeoxyribonuclease VII small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family.
  
     0.669
Noca_1525
KEGG: sma:SAV3061 hypothetical protein.
  
     0.667
Noca_2907
KEGG: fra:Francci3_1319 conserved hypothetical protein.
  
     0.585
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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