STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_4322PFAM: major facilitator superfamily MFS_1; KEGG: sma:SAV3640 multidrug resistance protein. (418 aa)    
Predicted Functional Partners:
Noca_4321
PFAM: regulatory protein, ArsR; KEGG: sma:SAV5143 ArsR-family transcriptional regulator.
 
   
 0.767
Noca_2333
KEGG: sma:SAV5428 hypothetical protein.
   
  
 0.604
Noca_3926
PFAM: protein of unknown function DUF894, DitE; major facilitator superfamily MFS_1; KEGG: bxe:Bxe_B2022 major facilitator superfamily (MFS) multidrug efflux pump.
  
     0.595
Noca_4320
KEGG: tfu:Tfu_2746 hypothetical protein.
       0.555
Noca_1711
KEGG: bat:BAS2855 hypothetical protein.
  
     0.543
Noca_3822
KEGG: mxa:MXAN_6640 hypothetical protein.
  
     0.477
Noca_1468
PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: sco:SCO4430 secreted protein.
  
    0.473
Noca_3823
KEGG: mxa:MXAN_6640 hypothetical protein.
  
     0.447
Noca_4319
PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: mmc:Mmcs_3645 peptidase M20.
  
    0.421
Noca_1471
KEGG: sco:SCO1819 integral membrane protein.
  
   
 0.411
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.