Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Noca_4369KEGG: mmc:Mmcs_2007 hypothetical protein. (146 aa)    
Predicted Functional Partners:
Noca_3720
KEGG: nfa:nfa29830 hypothetical protein.
  
     0.712
Noca_4010
KEGG: mmc:Mmcs_1152 hypothetical protein.
 
   
 0.695
Noca_4370
KEGG: nfa:nfa29530 hypothetical protein.
 
     0.667
Noca_4371
KEGG: nfa:nfa24570 hypothetical protein.
 
     0.647
Noca_3635
KEGG: mbo:Mb3194 hypothetical protein.
  
     0.630
Noca_3636
PFAM: aminoglycoside phosphotransferase; KEGG: mmc:Mmcs_1560 aminoglycoside phosphotransferase.
  
     0.613
Noca_4372
PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: rha:RHA1_ro01522 short chain dehydrogenase.
 
     0.607
Noca_0296
PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: mbo:Mb1848 hypothetical protein.
 
     0.562
Noca_4368
Hypothetical protein.
  
    0.551
Noca_4373
KEGG: nfa:nfa24590 hypothetical protein.
 
     0.541
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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