Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-expression
Experiments
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[Homology]
Score
Noca_4372PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: rha:RHA1_ro01522 short chain dehydrogenase. (279 aa)    
Predicted Functional Partners:
Noca_4373
KEGG: nfa:nfa24590 hypothetical protein.
 
 0.915
Noca_4371
KEGG: nfa:nfa24570 hypothetical protein.
 
  
 0.913
Noca_4370
KEGG: nfa:nfa29530 hypothetical protein.
 
   
 0.845
Noca_0796
PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: rha:RHA1_ro02334 possible 3-oxoacyl-[acyl-carrier-protein] reductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
 
 
 0.782
Noca_3816
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: dar:Daro_1357 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
 
 
 0.696
Noca_3699
PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: rha:RHA1_ro06007 short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
 
 
 0.680
Noca_4503
Reductase; KEGG: rha:RHA1_ro06351 reductase.
  
     0.675
Noca_1829
PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: sco:SCO1692 oxidoreductase.
 
 
   0.653
Noca_4369
KEGG: mmc:Mmcs_2007 hypothetical protein.
 
     0.607
Noca_4368
Hypothetical protein.
  
 
 0.584
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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