STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_4373KEGG: nfa:nfa24590 hypothetical protein. (386 aa)    
Predicted Functional Partners:
Noca_4371
KEGG: nfa:nfa24570 hypothetical protein.
 
    0.933
Noca_4372
PFAM: short-chain dehydrogenase/reductase SDR; KR; KEGG: rha:RHA1_ro01522 short chain dehydrogenase.
 
 0.917
Noca_4370
KEGG: nfa:nfa29530 hypothetical protein.
 
   
 0.884
Noca_1037
PFAM: pentapeptide repeat protein.
 
 0.830
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
 0.827
Noca_0302
KEGG: nfa:nfa48960 hypothetical protein.
 
 
 0.817
Noca_2818
KEGG: sma:SAV5893 hypothetical protein.
 
 0.784
Noca_2518
PFAM: Rieske [2Fe-2S] domain protein; KEGG: rha:RHA1_ro04538 ketosteroid-9-alpha-hydroxylase, oxygenase.
 
     0.775
dnaK
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 0.767
Noca_4417
PFAM: nuclear transport factor 2; KEGG: mpa:MAP0541c hypothetical protein.
  
     0.760
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.