STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_4375PFAM: cytochrome P450; KEGG: mtc:MT0342 P450 heme-thiolate protein. (464 aa)    
Predicted Functional Partners:
Noca_0831
PFAM: ferredoxin; KEGG: bmb:BruAb1_1031 ferredoxin, 2Fe-2S.
  
 0.615
Noca_4376
KEGG: tfu:Tfu_2504 putative integral membrane protein.
       0.593
Noca_2966
TIGRFAM: glycosyltransferase, MGT family; PFAM: UDP-glucuronosyl/UDP-glucosyltransferase; glycosyl transferase, family 28; Glycosyltransferase 28, C-terminal domain; KEGG: mmc:Mmcs_1269 glycosyltransferase, MGT family.
 
 
 0.563
Noca_2520
PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: nfa:nfa50680 putative oxidoreductase.
 
 0.545
Noca_0783
PFAM: Saccharopine dehydrogenase; KEGG: sma:SAV1683 hypothetical protein.
  
   
 0.501
Noca_4378
PFAM: Cupin 4 family protein; KEGG: mmc:Mmcs_5250 cupin 4.
 
     0.492
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
    
 0.486
Noca_3155
TIGRFAM: phenylacetate-CoA oxygenase/reductase, PaaK subunit; PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: sco:SCO7475 putative phenylacetic acid degradation NADH oxidoreductase PaaE.
  
 0.478
Noca_3668
PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: nfa:nfa46020 putative oxidoreductase.
  
 0.478
Noca_4481
PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: nfa:nfa46020 putative oxidoreductase.
  
 0.478
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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