STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_4384KEGG: ret:RHE_CH02031 putative gualylate cyclase protein. (84 aa)    
Predicted Functional Partners:
Noca_1670
PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; KEGG: mag:amb3735 signal transduction histidine kinase.
  
 
 0.634
Noca_1362
KEGG: rha:RHA1_ro02307 hypothetical protein.
  
     0.625
Noca_3353
KEGG: rha:RHA1_ro04235 possible membrane protein.
  
   
 0.613
Noca_1006
PFAM: PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; KEGG: xcv:XCV1708 histidine kinase-response regulator hybrid protein.
  
 
 0.581
Noca_1977
KEGG: mca:MCA1204 sensory box histidine kinase/response regulator; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
   
 
 0.575
Noca_4383
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein, AraC type; KEGG: ade:Adeh_2267 transcriptional regulator, AraC family.
  
  
 0.573
Noca_4382
PFAM: regulatory protein, LuxR; Bacterio-opsin activator, HTH domain protein; Tetratricopeptide TPR_4; KEGG: sma:SAV2729 LuxR-family transcriptional regulator.
 
 
 0.541
Noca_1964
KEGG: sco:SCO0559 hypothetical protein.
 
     0.493
Noca_1363
PFAM: Cupin 2, conserved barrel domain protein; KEGG: nfa:nfa32740 hypothetical protein.
 
     0.471
Noca_4018
Amino acid/amide ABC transporter substrate-binding protein, HAAT family; KEGG: rme:Rmet_5877 extracellular ligand-binding receptor; TC 3.A.1.4.-.
  
     0.447
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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