STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_4388PFAM: nitroreductase; KEGG: dde:Dde_1353 nitroreductase family protein. (211 aa)    
Predicted Functional Partners:
Noca_3233
PFAM: protein of unknown function RIO1; KEGG: eba:ebA56 RIO-type serine/threonine protein kinase.
  
     0.644
Noca_4387
Amidase, hydantoinase/carbamoylase family; KEGG: sco:SCO3072 N-carbamoyl-L-amino acid amidohydrolase; TIGRFAM: amidase, hydantoinase/carbamoylase family; PFAM: peptidase M20.
  
  
 0.586
Noca_4386
PFAM: amidohydrolase; KEGG: sco:SCO3071 atrazine chlorohydrolase.
     
 0.583
hutI
Imidazolonepropionase; KEGG: sco:SCO3070 putative imidazolonepropionase; TIGRFAM: imidazolonepropionase; PFAM: amidohydrolase; Amidohydrolase 3; Belongs to the metallo-dependent hydrolases superfamily. HutI family.
       0.578
Noca_4389
PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: mxa:MXAN_2289 peptidase, M20E (Gly-X carboxypeptidase) subfamily.
  
  
 0.578
Noca_4390
PFAM: major facilitator superfamily MFS_1; KEGG: rha:RHA1_ro00430 multidrug resistance transporter, MFS superfamily.
     
 0.561
Noca_0257
PFAM: Mycobacterium tuberculosis paralogous family 11; KEGG: sma:SAV7465 hypothetical protein.
 
   
 0.526
Noca_2731
PFAM: luciferase family protein; KEGG: rha:RHA1_ro04686 probable 5,10-methylenetetrahydromethanopterin reductase.
 
  
 0.495
Noca_3078
KEGG: fra:Francci3_1400 hypothetical protein.
  
     0.469
Noca_2675
PFAM: pentapeptide repeat protein.
 
     0.450
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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