STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_4400PFAM: major facilitator superfamily MFS_1; KEGG: rha:RHA1_ro06491 transporter, MFS superfamily. (397 aa)    
Predicted Functional Partners:
Noca_2022
PFAM: extracellular solute-binding protein, family 1; KEGG: fra:Francci3_1592 extracellular solute-binding protein, family 1.
  
  
 0.715
Noca_4402
PFAM: regulatory proteins, IclR; KEGG: lxx:Lxx22150 transcriptional regulator, IclR family.
 
  
 0.638
Noca_4399
Hypothetical protein; KEGG: rxy:Rxyl_0139 LigA.
       0.570
Noca_4401
KEGG: rha:RHA1_ro05135 hypothetical protein.
     
 0.489
Noca_2194
PFAM: regulatory protein, TetR; KEGG: fal:FRAAL3510 putative TetR-family transcriptional regulator (partial match).
 
  
 0.464
pheT
TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit; KEGG: sma:SAV6743 putative phenylalanyl-tRNA synthetase beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
     
 0.454
Noca_1977
KEGG: mca:MCA1204 sensory box histidine kinase/response regulator; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
  
  
 0.444
Noca_1460
PFAM: major facilitator superfamily MFS_1; KEGG: rha:RHA1_ro06868 probable transporter, MFS superfamily.
  
  
 0.428
Noca_1769
PFAM: major facilitator superfamily MFS_1; KEGG: rha:RHA1_ro04560 probable transporter, MFS superfamily.
  
  
 0.428
Noca_1670
PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; KEGG: mag:amb3735 signal transduction histidine kinase.
  
  
 0.425
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.