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Noca_4402 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_4402" - Regulatory proteins IclR in Nocardioides sp. JS614
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_4402Regulatory proteins IclR (256 aa)    
Predicted Functional Partners:
Noca_4401
Hypothetical protein (118 aa)
              0.840
Noca_1008
Regulatory proteins IclR (133 aa)
   
          0.773
Noca_1292
Regulatory proteins IclR (226 aa)
   
          0.750
Noca_4398
Histidine ammonia-lyase (533 aa)
 
   
    0.700
Noca_4403
Hypothetical protein (809 aa)
              0.669
hutI
Imidazolonepropionase (391 aa)
 
   
    0.631
Noca_3299
Regulatory proteins IclR (240 aa)
   
          0.617
Noca_4400
Major facilitator transporter (397 aa)
              0.542
hutU
Urocanate hydratase (555 aa)
              0.501
Noca_4404
Hypothetical protein (1033 aa)
   
        0.478
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
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