STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_4402PFAM: regulatory proteins, IclR; KEGG: lxx:Lxx22150 transcriptional regulator, IclR family. (256 aa)    
Predicted Functional Partners:
Noca_1008
PFAM: regulatory proteins, IclR; KEGG: mmc:Mmcs_1697 regulatory proteins, IclR.
  
     0.757
Noca_4401
KEGG: rha:RHA1_ro05135 hypothetical protein.
       0.757
Noca_1292
SMART: regulatory proteins, IclR; KEGG: sma:SAV5141 differentiation regulon (IclR-family transcriptional regulator).
  
     0.615
Noca_4403
Hypothetical protein; KEGG: mxa:MXAN_3638 peptidase, M19 family.
       0.594
Noca_2977
PFAM: Allophanate hydrolase subunit 1; KEGG: sma:SAV6938 inhibitor of KinA.
  
    0.587
Noca_4400
PFAM: major facilitator superfamily MFS_1; KEGG: rha:RHA1_ro06491 transporter, MFS superfamily.
 
  
 0.584
Noca_0092
TIGRFAM: urea amidolyase related protein; PFAM: Allophanate hydrolase subunit 2; KEGG: tfu:Tfu_1968 allophanate hydrolase subunit 2.
  
    0.473
Noca_2976
TIGRFAM: urea amidolyase related protein; PFAM: Allophanate hydrolase subunit 2; KEGG: sma:SAV6937 antagonist of KipI.
  
    0.473
Noca_4398
KEGG: nfa:nfa12280 putative histidine ammonia-lyase; TIGRFAM: histidine ammonia-lyase; PFAM: phenylalanine/histidine ammonia-lyase.
 
   
 0.449
Noca_3299
PFAM: regulatory proteins, IclR; KEGG: sma:SAV2687 IclR-family transcriptional regulator.
  
     0.426
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.