STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_4403Hypothetical protein; KEGG: mxa:MXAN_3638 peptidase, M19 family. (809 aa)    
Predicted Functional Partners:
Noca_4402
PFAM: regulatory proteins, IclR; KEGG: lxx:Lxx22150 transcriptional regulator, IclR family.
       0.594
Noca_4401
KEGG: rha:RHA1_ro05135 hypothetical protein.
       0.582
Noca_4404
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; protein of unknown function DUF224, cysteine-rich region domain protein; KEGG: mpa:MAP3831c hypothetical protein.
  
    0.524
Noca_1333
PFAM: peptidase S45, penicillin amidase; KEGG: dra:DRA0255 aculeacin A acylase.
 
  
 0.513
Noca_1362
KEGG: rha:RHA1_ro02307 hypothetical protein.
  
     0.504
Noca_3338
PFAM: peptidase S45, penicillin amidase; KEGG: dra:DRA0255 aculeacin A acylase.
 
  
 0.480
Noca_1778
Hypothetical protein; KEGG: lbl:LBL_1155 plastocyanin.
 
     0.478
Noca_4018
Amino acid/amide ABC transporter substrate-binding protein, HAAT family; KEGG: rme:Rmet_5877 extracellular ligand-binding receptor; TC 3.A.1.4.-.
  
     0.475
Noca_4017
Branched-chain amino acid transport system permease protein; PFAM: inner-membrane translocator; KEGG: fal:FRAAL3359 putative sulfate-transporting ATPase; TC 3.A.1.4.-; TC 3.A.1.4.-; Belongs to the binding-protein-dependent transport system permease family.
 
     0.453
Noca_0117
PFAM: transcriptional regulator PadR family protein; KEGG: nfa:nfa31300 putative transcriptional regulator.
  
     0.448
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.