Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Noca_4409KEGG: rha:RHA1_ro02601 hypothetical protein. (274 aa)    
Predicted Functional Partners:
Noca_4408
KEGG: fra:Francci3_2434 hypothetical protein.
 
     0.909
Noca_4410
Hypothetical protein.
       0.668
Noca_3607
PFAM: ATP-binding region, ATPase domain protein domain protein; PspC domain protein; KEGG: sma:SAV3471 two-component system sensor kinase.
  
  
 0.528
Noca_3608
PFAM: PspC domain protein; KEGG: sma:SAV3472 hypothetical protein.
 
  
 0.510
Noca_4516
PFAM: membrane protein of unknown function; KEGG: sma:SAV4271 hypothetical protein.
  
  
 0.490
Noca_1062
PFAM: protein of unknown function DUF1707; KEGG: sma:SAV5183 hypothetical protein.
  
  
 0.482
Noca_2827
PFAM: protein of unknown function DUF1707; KEGG: tfu:Tfu_0460 hypothetical protein.
  
  
 0.482
Noca_4358
PFAM: pentapeptide repeat protein; KEGG: fra:Francci3_2300 pentapeptide repeat.
 
 
   0.464
Noca_0967
PFAM: PspC domain protein; KEGG: sco:SCO4903 hypothetical protein.
  
  
 0.438
Noca_3344
KEGG: bcn:Bcen_5567 hypothetical protein.
 
     0.435
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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