Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Noca_4431PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: sco:SCO7307 chromosome replication initiation inhibitor protein; Belongs to the LysR transcriptional regulatory family. (293 aa)    
Predicted Functional Partners:
Noca_4432
PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: xcv:XCV3263 L-lysine exporter family protein.
 
   
 0.965
Noca_2549
Transcriptional regulator, ArsR family; PFAM: HMG-I and HMG-Y, DNA-binding domain protein; regulatory protein, ArsR; Helix-turn-helix, type 11 domain protein; KEGG: sma:SAV6324 DNA-binding protein.
   
  
 0.660
Noca_1395
TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: pac:PPA1699 cell envelope-related transcriptional attenuator.
   
    0.656
Noca_1609
KEGG: rha:RHA1_ro08010 hypothetical protein.
   
    0.649
Noca_2660
PFAM: regulatory protein, AsnC/Lrp family; KEGG: sco:SCO1425 putative AsnC-family transcriptional regulatory protein.
   
  
 0.644
Noca_3873
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH; KEGG: nfa:nfa49100 putative transcriptional regulator.
   
  
 0.641
Noca_1801
PFAM: regulatory protein, MarR; KEGG: tfu:Tfu_2393 regulatory protein, MarR.
   
  
 0.637
cobB
PFAM: Silent information regulator protein Sir2; KEGG: sal:Sala_2748 silent information regulator protein Sir2; Belongs to the sirtuin family. Class III subfamily.
  
    0.635
Noca_0781
PFAM: Silent information regulator protein Sir2; KEGG: nfa:nfa43380 putative Sir2 family regulator.
  
    0.635
Noca_0543
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH; UbiC transcription regulator-associated domain protein; KEGG: rxy:Rxyl_1898 transcriptional regulator, GntR family.
  
  
 0.608
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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