Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Noca_4435KEGG: nfa:nfa44140 hypothetical protein. (481 aa)    
Predicted Functional Partners:
Noca_4371
KEGG: nfa:nfa24570 hypothetical protein.
 
     0.586
Noca_3307
KEGG: mpa:MAP3677 hypothetical protein.
  
     0.566
Noca_0152
Hypothetical protein.
  
     0.553
Noca_4436
PFAM: aldo/keto reductase; KEGG: ecj:JW1403 predicted oxidoreductase, NAD(P)-binding.
       0.552
Noca_1454
KEGG: sma:SAV5466 hypothetical protein.
 
     0.507
Noca_3755
KEGG: sma:SAV5466 hypothetical protein.
 
     0.482
Noca_1450
KEGG: sma:SAV5466 hypothetical protein.
 
     0.474
Noca_4418
Hypothetical protein.
  
     0.462
Noca_3936
KEGG: sma:SAV5466 hypothetical protein.
 
     0.456
Noca_3760
KEGG: sma:SAV5466 hypothetical protein.
 
     0.450
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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