Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Noca_4437KEGG: fal:FRAAL4052 hypothetical membrane protein. (238 aa)    
Predicted Functional Partners:
Noca_1365
KEGG: tfu:Tfu_1996 putative integral membrane protein.
  
  
 0.688
Noca_3404
TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein; KEGG: sma:SAV6094 thiamine biosynthesis ThiS.
 
     0.644
Noca_4438
TIGRFAM: phosphoglucomutase, alpha-D-glucose phosphate-specific; PFAM: phosphoglucomutase/phosphomannomutase C terminal; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; KEGG: mpa:MAP3146c phosphoglucomutase.
       0.567
Noca_1540
KEGG: sco:SCO4525 hypothetical protein.
  
     0.512
Noca_4580
Hypothetical protein; KEGG: cac:CAC1615 predicted glycosyltransferase.
  
     0.492
Noca_4584
PFAM: glycosyl transferase, family 2; KEGG: dsy:DSY3936 hypothetical protein.
  
     0.492
Noca_1122
Hypothetical protein; KEGG: eba:ebA1616 general secretion protein H.
  
     0.469
Noca_2905
KEGG: tfu:Tfu_1932 hypothetical protein.
  
     0.462
Noca_0158
Hypothetical protein.
  
     0.438
Noca_3669
KEGG: sco:SCO6061 putative oxidoreductase; TIGRFAM: methionine-R-sulfoxide reductase; PFAM: Methionine sulfoxide reductase B; Belongs to the MsrB Met sulfoxide reductase family.
  
    0.436
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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