Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Noca_4447PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sma:SAV4248 putative ABC transporter ATP-binding protein. (303 aa)    
Predicted Functional Partners:
Noca_4448
KEGG: sco:SCO3959 possible integral membrane protein.
 
 
 0.974
Noca_4446
KEGG: sco:SCO3957 possible integral membrane protein.
 
 
 0.969
Noca_4445
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sco:SCO3956 putative ABC transporter ATP-binding protein.
 
    
0.848
Noca_4444
PFAM: FAD dependent oxidoreductase; KEGG: ana:all3744 probable phytoene dehydrogenase.
       0.670
ftsE
Cell division ATP-binding protein FtsE; Part of the ABC transporter FtsEX involved in cellular division.
     
0.644
Noca_2212
KEGG: rha:RHA1_ro02954 possible ABC antibiotics transporter.
 
 
 0.550
Noca_2560
KEGG: nfa:nfa24760 putative ABC transporter.
 
 
 0.528
Noca_1483
PFAM: ABC-2 type transporter; KEGG: rha:RHA1_ro04497 ABC transporter, permease component.
 
  
 0.514
Noca_1540
KEGG: sco:SCO4525 hypothetical protein.
  
     0.502
Noca_1321
Hypothetical protein.
 
 
 0.471
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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