Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Noca_4448KEGG: sco:SCO3959 possible integral membrane protein. (239 aa)    
Predicted Functional Partners:
Noca_4445
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sco:SCO3956 putative ABC transporter ATP-binding protein.
 
 
 0.974
Noca_4447
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sma:SAV4248 putative ABC transporter ATP-binding protein.
 
 
 0.974
Noca_4446
KEGG: sco:SCO3957 possible integral membrane protein.
 
     0.957
Noca_4444
PFAM: FAD dependent oxidoreductase; KEGG: ana:all3744 probable phytoene dehydrogenase.
       0.668
Noca_1540
KEGG: sco:SCO4525 hypothetical protein.
  
     0.597
Noca_1021
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tfu:Tfu_1436 ABC-type multidrug transport system ATPase component.
 
 
 0.591
Noca_0320
KEGG: sma:SAV4558 hypothetical protein.
  
     0.552
Noca_0120
KEGG: tfu:Tfu_1447 ABC-type multidrug transport system ATPase component; TIGRFAM: daunorubicin resistance ABC transporter ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase.
  
 
 0.537
Noca_0249
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sco:SCO6360 ABC transporter ATP-binding protein.
  
 
 0.537
Noca_0250
KEGG: fal:FRAAL2980 putative ABC transporter transmembrane protein.
  
 
 0.537
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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