Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Noca_4463PFAM: major facilitator superfamily MFS_1; KEGG: sma:SAV4232 hypothetical protein. (449 aa)    
Predicted Functional Partners:
Noca_4524
KEGG: bps:BPSS1911 hypothetical protein.
  
     0.679
Noca_4462
PFAM: bifunctional deaminase-reductase domain protein; KEGG: cvi:CV3295 hypothetical protein.
   
 
 0.575
Noca_4606
PFAM: GCN5-related N-acetyltransferase; KEGG: sco:SCO4151 acetyltransferase.
  
     0.567
Noca_4338
KEGG: sma:SAV48 hypothetical protein.
  
     0.548
Noca_2122
PFAM: protein of unknown function DUF1326; KEGG: rde:RD1_2286 hypothetical protein.
  
     0.517
Noca_1964
KEGG: sco:SCO0559 hypothetical protein.
  
   
 0.511
Noca_1907
Hypothetical protein.
  
    0.509
Noca_4603
KEGG: sco:SCO2788 hypothetical protein.
  
     0.507
Noca_0119
PFAM: protein of unknown function DUF1503; KEGG: sco:SCO1068 hypothetical protein.
  
     0.495
Noca_1362
KEGG: rha:RHA1_ro02307 hypothetical protein.
  
     0.469
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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