STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_4467KEGG: mbo:Mb0088 possible hydrogenase HycP. (220 aa)    
Predicted Functional Partners:
Noca_4465
PFAM: NADH-ubiquinone oxidoreductase, chain 49kDa; KEGG: mbo:Mb0090 possible formate hydrogenase HycQ (FHL); Belongs to the complex I 49 kDa subunit family.
 
  
 0.998
Noca_4470
PFAM: NADH ubiquinone oxidoreductase, 20 kDa subunit; KEGG: mbo:Mb0085 probable oxidoreductase.
 
  
 0.988
Noca_4468
KEGG: mbo:Mb0087 possible formate hydrogenlyase HycD (FHL).
 
  
 0.985
Noca_4469
NADH dehydrogenase (quinone); PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: mtc:MT0090 NADH-ubiquinone oxidoreductase, putative.
 
  
 0.975
Noca_4466
NADH dehydrogenase (quinone); PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: mtc:MT0093 NADH-ubiquinone oxidoreductase, putative.
 
  
 0.943
Noca_4471
Transcriptional regulator, ArsR family; PFAM: regulatory protein, ArsR; KEGG: tfu:Tfu_0872 regulatory protein, ArsR.
 
    0.791
pckG-3
Phosphoenolpyruvate carboxykinase (GTP); Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP), the rate-limiting step in the metabolic pathway that produces glucose from lactate and other precursors derived from the citric acid cycle.
       0.504
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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