STRINGSTRING
Noca_4477 protein (Nocardioides sp. JS614) - STRING interaction network
"Noca_4477" - Extracellular solute-binding protein in Nocardioides sp. JS614
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_4477Extracellular solute-binding protein (292 aa)    
Predicted Functional Partners:
Noca_4479
LacI family transcriptional regulator (342 aa)
              0.861
Noca_4478
Major facilitator transporter (398 aa)
              0.859
Noca_4474
Peptidase M24 (415 aa)
   
        0.657
Noca_4475
6-phosphogluconate dehydrogenase (318 aa)
              0.622
Noca_4476
Hypothetical protein (376 aa)
              0.618
ligA
DNA ligase, NAD-dependent; DNA ligase that catalyzes the formation of phosphodiester linkages between 5’-phosphoryl and 3’-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA (752 aa)
       
      0.592
Noca_4473
Succinate semialdehyde dehydrogenase (486 aa)
         
  0.569
Noca_4171
Molybdopterin oxidoreductase (776 aa)
   
   
  0.489
Noca_2934
Formate dehydrogenase (953 aa)
   
   
  0.489
Noca_0662
Oxidoreductase alpha (molybdopterin) subunit (793 aa)
   
   
  0.489
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614, Nocardioides, Nocardioides JS614, Nocardioides sp. JS614
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