Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Noca_4477KEGG: pol:Bpro_0362 extracellular solute-binding protein, family 3. (292 aa)    
Predicted Functional Partners:
Noca_2905
KEGG: tfu:Tfu_1932 hypothetical protein.
  
 
 0.966
Noca_4478
PFAM: major facilitator superfamily MFS_1; KEGG: dar:Daro_1096 major facilitator superfamily MFS_1.
 
     0.924
Noca_4476
PFAM: protein of unknown function DUF1100, hydrolase family protein; KEGG: bcn:Bcen_5609 hypothetical protein; Belongs to the UPF0255 family.
 
     0.888
Noca_4479
Transcriptional regulator, LacI family; PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: reu:Reut_B5848 periplasmic binding protein/LacI transcriptional regulator.
 
     0.857
Noca_4474
PFAM: peptidase M24; KEGG: hma:rrnB0212 aminopeptidase.
 
   
 0.855
Noca_3268
PFAM: nitrogen regulatory protein P-II; KEGG: sco:SCO5584 nitrogen regulatory protein P-II; Belongs to the P(II) protein family.
   
 
 0.815
Noca_4475
PFAM: NADP oxidoreductase, coenzyme F420-dependent; 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: pae:PA2199 probable dehydrogenase.
 
     0.809
Noca_1694
PFAM: peptidylprolyl isomerase, FKBP-type; KEGG: sma:SAV6687 putative FK-506 binding protein, peptidyl-prolyl cis-trans isomerase.
   
    0.806
infA
Bacterial translation initiation factor 1 (bIF-1); One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex.
   
    0.806
Noca_4459
KEGG: rha:RHA1_ro03794 hypothetical protein.
 
    0.776
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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