STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_4488PFAM: ROK family protein; KEGG: blo:BL1342 NagC/XylR-type transciptional regulator. (374 aa)    
Predicted Functional Partners:
Noca_4484
PFAM: amidohydrolase; KEGG: rxy:Rxyl_0658 N-acetylglucosamine-6-phosphate deacetylase.
 
  
 0.655
Noca_4483
TIGRFAM: glucosamine-6-phosphate isomerase; PFAM: glucosamine/galactosamine-6-phosphate isomerase; KEGG: rha:RHA1_ro01547 glucosamine-6-phosphate deaminase.
 
   
 0.637
Noca_4485
PFAM: ROK family protein; KEGG: blo:BL1341 possible sugar kinase.
 
    
0.608
Noca_4487
Carbohydrate ABC transporter membrane protein 2, CUT1 family; KEGG: sco:SCO0533 putative sugar transporter membrane protein; TC 3.A.1.1.-.
 
   
 0.562
Noca_4486
PFAM: glycoside hydrolase, family 3 domain protein; KEGG: sco:SCO5235 sugar hydrolase.
     
 0.489
xylB
TIGRFAM: xylulokinase; PFAM: carbohydrate kinase, FGGY; KEGG: rha:RHA1_ro02812 probable xylulokinase.
  
  
 0.470
Noca_4489
TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: fal:FRAAL3261 putative membrane transport protein (cation efflux).
       0.458
Noca_3184
Fructose PTS system EIIBC or EIIC component; TIGRFAM: PTS system, fructose-specific, IIB subunnit; PTS system, fructose subfamily, IIA subunit; PTS system, fructose subfamily, IIC subunit; PFAM: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; phosphotransferase system, EIIC; phosphotransferase system PTS, fructose-specific IIB subunit; KEGG: mmc:Mmcs_0080 phosphotransferase system, fructose IIC component; TC 4.A.2.1.4; TC 4.A.2.1.4; TC 4.A.2.1.4.
  
  
 0.447
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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