STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Noca_4490PFAM: lipolytic enzyme, G-D-S-L family; KEGG: sco:SCO7513 secreted hydrolase. (299 aa)    
Predicted Functional Partners:
Noca_4489
TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: fal:FRAAL3261 putative membrane transport protein (cation efflux).
       0.560
Noca_0123
PFAM: regulatory protein, TetR; KEGG: mmc:Mmcs_3220 transcriptional regulator, TetR family.
  
     0.536
Noca_0373
KEGG: cch:Cag_1235 hypothetical protein.
  
 
 0.431
Noca_3731
KEGG: nfa:nfa42710 hypothetical protein.
  
 
 0.431
Your Current Organism:
Nocardioides sp. JS614
NCBI taxonomy Id: 196162
Other names: N. sp. JS614
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.